PEPP is organized into six divisions:

1) Renewable Energy; 2) Maritime Monitoring, Control and Surveillance; 3) Waste, Sanitation, and Water Management; 4) Wellness; 5) Climate Change Adaptation and Mitigation; and 6) Conservation.

In addition, PEPP currently has three Signature Projects:

1) The Pohnpei Solar Power Project; 2) Naval Auxiliary Transport, Asset Recovery and Search (NAVATARS), and; 3) UrCare expanded health care for Micronesia.